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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S2909_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S2909_1V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S2909_1V6.1annotation not available (267 aa)    
Predicted Functional Partners:
PP1S76_15V6.1
Predicted protein (397 aa)
   
   
  0.851
PP1S6_375V6.1
Predicted protein (657 aa)
   
   
  0.644
PP1S209_135V6.1
Acyl-coenzyme A oxidase ; Belongs to the acyl-CoA oxidase family (667 aa)
     
   
  0.640
PP1S22_40V6.1
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family (757 aa)
         
  0.640
PP1S114_86V6.1
Predicted protein (741 aa)
         
  0.626
PP1S164_52V6.1
annotation not available (444 aa)
           
  0.623
PP1S69_244V6.2
Predicted protein; Belongs to the sterol desaturase family (372 aa)
     
   
  0.607
PP1S65_21V6.2
Predicted protein; Belongs to the sterol desaturase family (398 aa)
     
   
  0.607
PP1S113_2V6.1
Predicted protein; Belongs to the sterol desaturase family (361 aa)
     
   
  0.607
PP1S248_38V6.1
Predicted protein (328 aa)
           
  0.602
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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