STRINGSTRING
PP1S294_51V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S294_51V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S294_51V6.1Predicted protein (259 aa)    
Predicted Functional Partners:
YKT6A2
R-SNARE, YKT6-family (156 aa)
     
      0.736
YKT6A1
R-SNARE, YKT6-family (200 aa)
     
      0.736
PP1S107_194V6.1
Predicted protein (140 aa)
       
 
  0.727
VTI1A4
Qb-SNARE, VTI1-family (221 aa)
     
      0.679
VTI1A3
Qb-SNARE, VTI1-family (220 aa)
     
      0.679
VTI1A1
Qb-SNARE, VTI1-family (220 aa)
     
      0.679
VTI1A2
Qb-SNARE, VTI1-family (221 aa)
     
      0.679
SEC22A2-1
R-SNARE, SEC22-family (219 aa)
     
      0.642
SEC22
R-SNARE, SEC22-family (219 aa)
     
      0.642
RabD12
Rab1/RabD-family small GTPase (203 aa)
     
 
  0.507
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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