STRINGSTRING
PP1S298_45V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S298_45V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S298_45V6.1Predicted protein (605 aa)    
Predicted Functional Partners:
CIPK04
Predicted protein (449 aa)
       
 
  0.787
CIPK03
Predicted protein (447 aa)
       
 
  0.787
CIPK02
Predicted protein (446 aa)
       
 
  0.787
CIPK05
Predicted protein (445 aa)
       
 
  0.787
CIPK01
Predicted protein (444 aa)
       
 
  0.787
PP1S91_181V6.1
Predicted protein (803 aa)
     
 
  0.551
PP1S145_151V6.1
Predicted protein (743 aa)
     
 
  0.551
PP1S93_131V6.1
Predicted protein (2251 aa)
     
   
  0.506
PP1S81_196V6.1
Predicted protein (2214 aa)
     
   
  0.506
PP1S79_140V6.1
Predicted protein (2213 aa)
     
   
  0.506
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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