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STRINGSTRING
PP1S29_183V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S29_183V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S29_183V6.1Predicted protein (462 aa)    
Predicted Functional Partners:
PP1S29_184V6.2
Predicted protein (312 aa)
 
 
  0.999
PP1S40_9V6.1
Malate synthase ; Belongs to the malate synthase family (559 aa)
   
 
  0.916
PP1S274_69V6.1
Urease ; In the C-terminal section; belongs to the metallo- dependent hydrolases superfamily. Urease alpha subunit family (837 aa)
     
 
  0.900
PP1S136_199V6.1
Predicted protein; Isocitrate lyase (567 aa)
     
 
  0.890
PP1S59_117V6.1
Uncharacterized protein (402 aa)
   
 
  0.889
PP1S369_6V6.1
Predicted protein (402 aa)
   
 
  0.889
PP1S19_25V6.1
Predicted protein (402 aa)
   
 
  0.889
PP1S64_220V6.1
Predicted protein (480 aa)
       
  0.831
PP1S341_73V6.2
Predicted protein (480 aa)
       
  0.831
PP1S215_28V6.1
Predicted protein (480 aa)
       
  0.831
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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