STRINGSTRING
CRY1a protein (Physcomitrella patens) - STRING interaction network
"CRY1a" - Cryptochrome 1a in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRY1aCryptochrome 1a (727 aa)    
Predicted Functional Partners:
PP1S81_234V6.1
Predicted protein (687 aa)
       
  0.959
PP1S264_64V6.1
Predicted protein (692 aa)
       
  0.959
PP1S154_52V6.1
Predicted protein (700 aa)
       
  0.959
PP1S135_17V6.1
Predicted protein (700 aa)
       
  0.959
PP1S11_401V6.1
Predicted protein (698 aa)
       
  0.959
PP1S134_37V6.1
Predicted protein (1469 aa)
       
  0.872
PP1S37_28V6.1
Predicted protein (668 aa)
       
  0.861
PP1S180_148V6.1
Predicted protein (688 aa)
       
  0.861
PHY5a
Phytochrome 5a; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1155 aa)
     
 
  0.836
PP1S111_37V6.1
Predicted protein (864 aa)
 
     
  0.836
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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