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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S302_56V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S302_56V6.1" - annotation not available in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S302_56V6.1annotation not available (1177 aa)    
Predicted Functional Partners:
PP1S184_72V6.1
Predicted protein (828 aa)
     
   
  0.999
PP1S145_53V6.1
annotation not available (842 aa)
     
   
  0.999
PP1S14_321V6.1
Predicted protein (347 aa)
     
   
  0.999
PP1S114_86V6.1
Predicted protein (741 aa)
   
 
  0.991
PP1S173_64V6.1
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family (485 aa)
   
   
  0.989
PP1S15_229V6.1
Predicted protein (351 aa)
   
   
  0.989
PP1S347_21V6.1
annotation not available (2174 aa)
     
   
  0.972
PP1S58_120V6.1
Predicted protein (122 aa)
     
 
  0.959
PP1S237_11V6.2
Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1’ of nucleotide 34 to detach the guanine base from the RNA, formi [...] (402 aa)
     
   
  0.937
PP1S142_26V6.1
Predicted protein (491 aa)
     
   
  0.934
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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