STRINGSTRING
PP1S306_17V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S306_17V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S306_17V6.1Predicted protein (295 aa)    
Predicted Functional Partners:
PP1S390_12V6.1
Predicted protein (388 aa)
 
   
  0.654
PP1S4666_1V6.1
Predicted protein (238 aa)
 
   
  0.640
PP1S144_96V6.1
Predicted protein (372 aa)
 
   
  0.620
PP1S44_240V6.1
Annotation not available (1095 aa)
     
 
  0.594
PP1S6484_1V6.1
Predicted protein (330 aa)
     
 
  0.486
PP1S49_195V6.1
Predicted protein (613 aa)
     
 
  0.486
PP1S309_65V6.1
Predicted protein (629 aa)
     
 
  0.486
PP1S217_8V6.1
Predicted protein (637 aa)
     
 
  0.486
PP1S1821_1V6.1
Annotation not available (676 aa)
     
 
  0.486
PP1S8031_1V6.1
Predicted protein (345 aa)
     
 
  0.485
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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