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STRINGSTRING
PP1S307_4V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S307_4V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S307_4V6.1Predicted protein (529 aa)    
Predicted Functional Partners:
PP1S144_153V6.1
Predicted protein (355 aa)
   
 
  0.814
PP1S15_392V6.1
Predicted protein; Belongs to the cytochrome P450 family (343 aa)
   
     
  0.722
PP1S114_126V6.1
Predicted protein (329 aa)
     
 
  0.634
PP1S96_224V6.1
Predicted protein (578 aa)
   
   
  0.632
PP1S325_20V6.1
Predicted protein (578 aa)
   
   
  0.632
PP1S138_50V6.1
annotation not available (777 aa)
     
   
  0.622
PP1S304_59V6.1
Predicted protein; Belongs to the chalcone/stilbene synthases family (418 aa)
           
  0.612
PP1S123_7V6.1
Predicted protein; Belongs to the sterol desaturase family (333 aa)
     
 
  0.593
PP1S69_244V6.2
Predicted protein; Belongs to the sterol desaturase family (372 aa)
     
 
  0.586
PP1S65_21V6.2
Predicted protein; Belongs to the sterol desaturase family (398 aa)
     
 
  0.586
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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