STRINGSTRING
PP1S30_12V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S30_12V6.1" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S30_12V6.1Annotation not available (192 aa)    
Predicted Functional Partners:
PP1S58_225V6.1
Annotation not available (364 aa)
   
          0.466
PP1S246_70V6.1
Predicted protein (481 aa)
   
          0.464
PP1S24_61V6.1
Predicted protein (518 aa)
   
          0.455
PP1S289_54V6.1
Predicted protein (487 aa)
   
          0.451
PP1S189_36V6.1
Annotation not available (444 aa)
   
          0.450
PP1S20_166V6.3
Annotation not available (665 aa)
   
          0.441
PP1S307_62V6.1
Predicted protein (604 aa)
   
          0.432
PP1S409_52V6.1
Annotation not available (509 aa)
   
          0.429
PP1S303_51V6.1
Predicted protein (267 aa)
   
          0.429
PP1S184_55V6.1
Predicted protein (467 aa)
   
          0.429
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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