STRINGSTRING
PP1S30_154V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S30_154V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S30_154V6.1Predicted protein (96 aa)    
Predicted Functional Partners:
PP1S52_135V6.1
Predicted protein (550 aa)
           
  0.505
PP1S399_23V6.1
Predicted protein (349 aa)
           
  0.491
PP1S25_30V6.1
Predicted protein (339 aa)
           
  0.491
PP1S245_92V6.1
Predicted protein (343 aa)
           
  0.491
PP1S75_117V6.1
Annotation not available (259 aa)
           
  0.473
MEMB1A2
Qb-SNARE, MEMB1-family (248 aa)
           
  0.473
PP1S65_226V6.1
Predicted protein (380 aa)
           
  0.434
PP1S142_105V6.1
Predicted protein (432 aa)
           
  0.434
PP1S75_114V6.1
Predicted protein (96 aa)
           
  0.407
Tub2
Predicted protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (443 aa)
       
 
  0.400
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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