STRINGSTRING
PP1S30_174V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S30_174V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S30_174V6.2Predicted protein (304 aa)    
Predicted Functional Partners:
PP1S79_94V6.1
Predicted protein (396 aa)
     
      0.760
PP1S47_221V6.1
Predicted protein (208 aa)
 
        0.716
PP1S251_39V6.2
Annotation not available (445 aa)
       
  0.711
PP1S2121_1V6.1
Predicted protein (133 aa)
 
        0.675
PP1S229_62V6.1
Annotation not available (354 aa)
     
      0.655
PP1S150_15V6.1
Predicted protein (312 aa)
     
      0.655
PP1S35_95V6.1
Predicted protein (241 aa)
       
  0.652
PP1S112_188V6.1
Predicted protein (351 aa)
       
  0.652
PP1S80_110V6.1
Predicted protein (208 aa)
   
        0.545
PP1S75_223V6.1
Predicted protein (208 aa)
   
        0.545
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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