STRINGSTRING
PP1S30_346V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S30_346V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S30_346V6.1Predicted protein (234 aa)    
Predicted Functional Partners:
SLY1PS
SM/Sec1-family protein-like protein (318 aa)
     
  0.981
SLY1A
SM/Sec1-family protein (625 aa)
     
  0.981
PP1S3_335V6.1
Predicted protein (290 aa)
     
  0.972
PP1S196_43V6.1
Predicted protein (293 aa)
     
  0.972
PP1S148_79V6.1
Predicted protein (168 aa)
     
  0.972
PP1S12_357V6.1
Predicted protein (287 aa)
     
  0.972
SYP8
Qa-SNARE, SYP8/Ufe1p/Syntaxin 18-type (316 aa)
       
  0.961
PP1S60_307V6.1
Predicted protein (347 aa)
     
  0.948
PP1S245_32V6.2
Predicted protein (322 aa)
     
  0.939
PP1S1_402V6.1
Annotation not available (744 aa)
     
  0.939
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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