PP1S311_68V6.1 protein (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP1S311_68V6.1

Annotation not available (362 aa)

Predicted Functional Partners:

PP1S380_13V6.1

0.434

PP1S78_54V6.1

0.431

PP1S104_220V6.1

0.431

PP1S358_43V6.1

0.407

PP1S257_59V6.1

0.407

PP1S201_87V6.1

0.407

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PP1S104_220V6.1	PP1S311_68V6.1	Predicted protein	Annotation not available	0.431
PP1S201_87V6.1	PP1S311_68V6.1	Predicted protein	Annotation not available	0.407
PP1S257_59V6.1	PP1S311_68V6.1	Predicted protein	Annotation not available	0.407
PP1S257_59V6.1	PP1S380_13V6.1	Predicted protein	Predicted protein	0.431
PP1S311_68V6.1	PP1S104_220V6.1	Annotation not available	Predicted protein	0.431
PP1S311_68V6.1	PP1S201_87V6.1	Annotation not available	Predicted protein	0.407
PP1S311_68V6.1	PP1S257_59V6.1	Annotation not available	Predicted protein	0.407
PP1S311_68V6.1	PP1S358_43V6.1	Annotation not available	Predicted protein	0.407
PP1S311_68V6.1	PP1S380_13V6.1	Annotation not available	Predicted protein	0.434
PP1S311_68V6.1	PP1S78_54V6.1	Annotation not available	Predicted protein	0.431
PP1S358_43V6.1	PP1S311_68V6.1	Predicted protein	Annotation not available	0.407
PP1S358_43V6.1	PP1S380_13V6.1	Predicted protein	Predicted protein	0.431
PP1S380_13V6.1	PP1S257_59V6.1	Predicted protein	Predicted protein	0.431
PP1S380_13V6.1	PP1S311_68V6.1	Predicted protein	Annotation not available	0.434
PP1S380_13V6.1	PP1S358_43V6.1	Predicted protein	Predicted protein	0.431
PP1S78_54V6.1	PP1S311_68V6.1	Predicted protein	Annotation not available	0.431

Network

Cooccurrence

Textmining

Neighborhood

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About