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PP1S312_21V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S312_21V6.1" - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S312_21V6.12-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (251 aa)    
Predicted Functional Partners:
HDS3
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (749 aa)
 
 
  0.988
PP1S20_67V6.1
Predicted protein (751 aa)
 
 
  0.988
PP1S149_51V6.2
Predicted protein (426 aa)
 
 
  0.987
PP1S73_243V6.2
Predicted protein (485 aa)
 
  0.929
PP1S62_157V6.2
Annotation not available (485 aa)
 
  0.929
PP1S71_230V6.1
Predicted protein (751 aa)
 
 
  0.886
PP1S90_44V6.1
Predicted protein (339 aa)
 
   
  0.881
PP1S211_107V6.1
Annotation not available (356 aa)
 
   
  0.880
PP1S32_278V6.1
Predicted protein (482 aa)
 
   
  0.773
PP1S210_40V6.1
Predicted protein (475 aa)
 
   
  0.771
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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