STRINGSTRING
PP1S312_42V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S312_42V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S312_42V6.1Predicted protein (1091 aa)    
Predicted Functional Partners:
PP1S36_327V6.1
Predicted protein (159 aa)
       
      0.650
PP1S28_210V6.1
Predicted protein (146 aa)
       
      0.650
PP1S35_343V6.1
Predicted protein (102 aa)
       
      0.643
PP1S190_29V6.1
Predicted protein (170 aa)
       
      0.643
PP1S157_19V6.1
Predicted protein (62 aa)
       
      0.643
PP1S72_111V6.1
Predicted protein (485 aa)
       
      0.639
PP1S49_246V6.1
Predicted protein (540 aa)
       
      0.639
PP1S37_264V6.1
Predicted protein (451 aa)
       
      0.639
PP1S2_113V6.1
Predicted protein (451 aa)
       
      0.639
PP1S25_78V6.1
Annotation not available (377 aa)
       
      0.639
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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