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STRINGSTRING
MSCL4 protein (Physcomitrella patens) - STRING interaction network
"MSCL4" - MscS-Like mechanosensitive ion channel MSCL4 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSCL4MscS-Like mechanosensitive ion channel MSCL4 (448 aa)    
Predicted Functional Partners:
PP1S96_143V6.1
Predicted protein (338 aa)
         
  0.542
PP1S101_118V6.2
DNA replication complex GINS protein PSF2 ; Belongs to the GINS2/PSF2 family (226 aa)
           
  0.513
CTU1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position (348 aa)
   
   
  0.461
PP1S16_381V6.1
annotation not available (901 aa)
         
  0.432
PP1S137_76V6.1
annotation not available (896 aa)
         
  0.432
PP1S95_19V6.1
Predicted protein (304 aa)
           
  0.416
PP1S415_8V6.1
annotation not available (294 aa)
           
  0.416
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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