STRINGSTRING
PP1S314_28V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S314_28V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S314_28V6.1Predicted protein (925 aa)    
Predicted Functional Partners:
CPC1505
Condensin complex component SMC3 (1171 aa)
     
  0.941
PP1S122_44V6.1
Annotation not available (103 aa)
     
  0.941
PP1S127_123V6.2
Predicted protein (583 aa)
     
      0.930
SDG1530
Predicted protein (614 aa)
     
  0.927
CPC1502
Condensin complex component SMC1 (1209 aa)
     
  0.922
PP1S32_42V6.1
Annotation not available (1145 aa)
     
  0.920
PP1S241_48V6.1
Annotation not available (1722 aa)
     
  0.920
PP1S10_9V6.1
Annotation not available (1850 aa)
     
  0.920
PP1S199_157V6.1
Predicted protein (1204 aa)
     
  0.912
PP1S77_196V6.1
Predicted protein (45 aa)
     
  0.910
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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