• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S315_40V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S315_40V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S315_40V6.1Predicted protein; Belongs to the peptidase C1 family (369 aa)    
Predicted Functional Partners:
PP1S75_43V6.1
Ubiquitinyl hydrolase 1; Ubiquitin carboxyl-terminal hydrolase (621 aa)
           
  0.781
PP1S31_164V6.1
Cysteine protease (386 aa)
     
   
  0.663
PP1S130_263V6.1
Cysteine protease (386 aa)
     
   
  0.663
PP1S121_83V6.1
annotation not available (486 aa)
     
 
  0.635
PP1S72_227V6.1
Predicted protein (3779 aa)
     
   
  0.624
PP1S53_78V6.1
annotation not available (3804 aa)
     
   
  0.624
GCP1
Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance (476 aa)
           
  0.618
PP1S131_72V6.1
Carboxypeptidase; Belongs to the peptidase S10 family (503 aa)
     
   
  0.603
PP1S292_64V6.1
Aminopeptidase (755 aa)
         
  0.594
PP1S79_112V6.1
Predicted protein (331 aa)
   
   
  0.582
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (6%) [HD]