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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S31_114V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S31_114V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S31_114V6.1Predicted protein (306 aa)    
Predicted Functional Partners:
HTB1502
Histone H2B (136 aa)
       
      0.553
HTB1505
Histone H2B (138 aa)
       
      0.553
HTB1504
Histone H2B (178 aa)
       
      0.553
HTB1506
Histone H2B (135 aa)
       
      0.553
HTB1507
Histone H2B (134 aa)
       
      0.553
HTB1503
Histone H2B (136 aa)
       
      0.553
HTB1508.2
Histone H2B (133 aa)
       
      0.553
HTB1508.1
Histone H2B (135 aa)
       
      0.553
HTB1501
Histone H2B (136 aa)
       
      0.553
PP1S72_86V6.1
annotation not available (148 aa)
       
      0.524
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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