STRINGSTRING
GH3-1 protein (Physcomitrella patens) - STRING interaction network
"GH3-1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GH3-1Predicted protein (636 aa)    
Predicted Functional Partners:
GH3-2
Predicted protein (599 aa)
   
   
0.815
PP1S81_234V6.1
Predicted protein (687 aa)
     
      0.491
PP1S37_28V6.1
Predicted protein (668 aa)
     
      0.491
PP1S264_64V6.1
Predicted protein (692 aa)
     
      0.491
PP1S25_325V6.1
Annotation not available (676 aa)
     
      0.491
PP1S180_148V6.1
Predicted protein (688 aa)
     
      0.491
PP1S154_52V6.1
Predicted protein (700 aa)
     
      0.491
PP1S135_17V6.1
Predicted protein (700 aa)
     
      0.491
PP1S11_401V6.1
Predicted protein (698 aa)
     
      0.491
PP1S7_222V6.2
Predicted protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain (1024 aa)
           
  0.480
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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