STRINGSTRING
PP1S334_21V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S334_21V6.1" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S334_21V6.1Annotation not available (915 aa)    
Predicted Functional Partners:
PP1S131_4V6.1
Predicted protein (297 aa)
   
  0.953
PP1S488_8V6.1
Uridine kinase (520 aa)
   
0.941
PP1S83_234V6.1
Uridine kinase (530 aa)
   
0.941
PP1S19_94V6.1
Predicted protein (482 aa)
   
0.941
PP1S370_24V6.1
Uridine kinase (486 aa)
   
0.941
PP1S299_3V6.1
Phosphoribulokinase (423 aa)
     
 
  0.924
PP1S228_12V6.1
Annotation not available (191 aa)
     
 
  0.924
PP1S20_273V6.1
Phosphoribulokinase (426 aa)
     
 
  0.924
PP1S132_175V6.1
Phosphoribulokinase (423 aa)
     
 
  0.924
PP1S74_168V6.1
Predicted protein (424 aa)
     
  0.914
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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