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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S336_52V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S336_52V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S336_52V6.1annotation not available (402 aa)    
Predicted Functional Partners:
PBP
annotation not available (656 aa)
 
     
  0.555
PP1S13_446V6.1
Predicted protein (1408 aa)
     
 
  0.467
PP1S8174_1V6.1
Predicted protein (379 aa)
   
   
  0.438
CTU1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position (348 aa)
         
  0.436
PP1S41_307V6.1
annotation not available (708 aa)
         
  0.436
PP1S36_358V6.1
Predicted protein (757 aa)
           
  0.424
PP1S4939_2V6.1
Predicted protein (240 aa)
           
  0.404
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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