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RabC11 protein (Physcomitrella patens) - STRING interaction network
"RabC11" - Rab18/RabC-family small GTPase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RabC11Rab18/RabC-family small GTPase (211 aa)    
Predicted Functional Partners:
PP1S69_112V6.1
Predicted protein (274 aa)
     
      0.793
PP1S68_211V6.1
Predicted protein (99 aa)
     
      0.793
PP1S424_28V6.1
Predicted protein (273 aa)
     
      0.793
PP1S226_46V6.1
Predicted protein (268 aa)
     
      0.793
PP1S65_107V6.1
Predicted protein (216 aa)
       
      0.655
PP1S34_161V6.1
Predicted protein (212 aa)
       
      0.655
PP1S2_143V6.1
Predicted protein (204 aa)
   
 
0.650
RabH11
Rab6/RabH-family small GTPase (211 aa)
   
 
0.646
RabH12
Rab6/RabH-family small GTPase (210 aa)
   
 
0.646
RabH21
Rab6/RabH-family small GTPase (213 aa)
   
 
0.645
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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