STRINGSTRING
PP1S339_68V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S339_68V6.1" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S339_68V6.1Annotation not available (234 aa)    
Predicted Functional Partners:
PP1S359_8V6.1
Predicted protein (976 aa)
       
 
  0.803
PP1S245_46V6.1
Predicted protein (917 aa)
       
 
  0.803
PP1S360_36V6.1
Predicted protein (579 aa)
           
  0.418
pplax2
Predicted protein (482 aa)
           
  0.407
TIRA1
TIRA1 TIR1-like auxin receptor (570 aa)
           
  0.407
pplax1
Predicted protein (482 aa)
           
  0.407
TIRB2
TIRB2 TIR1-like auxin receptor protein (567 aa)
           
  0.407
TIRA2
TIRA2 TIR1-like auxin receptor protein (571 aa)
           
  0.407
TIRB1
TIR1-like auxin receptor (570 aa)
           
  0.407
PP1S72_212V6.1
Predicted protein (232 aa)
       
 
  0.400
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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