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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Pa protein (Physcomitrella patens) - STRING interaction network
"Pa" - Uncharacterized protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaUncharacterized protein (118 aa)    
Predicted Functional Partners:
PP1S275_63V6.3
Predicted protein (255 aa)
     
        0.788
PP1S22_380V6.1
Predicted protein (196 aa)
     
   
  0.725
PP1S47_214V6.1
Predicted protein (646 aa)
           
  0.592
PP1S188_15V6.1
Predicted protein (646 aa)
           
  0.592
Sep4b
Uncharacterized protein (385 aa)
     
   
  0.572
Sep4c
Uncharacterized protein (304 aa)
     
   
  0.572
Sep4a
Uncharacterized protein (304 aa)
     
   
  0.572
PP1S455_8V6.1
Predicted protein (372 aa)
     
   
  0.563
PP1S221_76V6.1
Predicted protein (490 aa)
     
   
  0.563
PP1S101_95V6.4
PsbY photosystem II polypeptide (368 aa)
     
   
  0.563
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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