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CHR1512 protein (Physcomitrella patens) - STRING interaction network
"CHR1512" - SNF2 family DNA-dependent ATPase in Physcomitrella patens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR1512SNF2 family DNA-dependent ATPase (1649 aa)    
Predicted Functional Partners:
PP1S33_203V6.1
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1397 aa)
   
  0.966
PP1S109_208V6.1
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1464 aa)
   
  0.966
GTC1501
FACT complex subunit (1060 aa)
     
  0.960
PP1S80_151V6.1
DNA-directed RNA polymerase alpha chain (525 aa)
   
  0.956
PP1S29_169V6.1
DNA-directed RNA polymerase (665 aa)
   
  0.949
PP1S34_27V6.1
Predicted protein (63 aa)
     
 
  0.945
PP1S199_36V6.1
Predicted protein (674 aa)
     
 
  0.945
PAFD1501
Paf1 complex protein (642 aa)
     
 
  0.938
PP1S197_12V6.1
Predicted protein (145 aa)
     
    0.932
HDA1504
Histone deacetylase (723 aa)
     
  0.923
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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