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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S347_21V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S347_21V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S347_21V6.1annotation not available (2174 aa)    
Predicted Functional Partners:
PP1S203_96V6.1
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (789 aa)
     
 
  0.997
PP1S267_83V6.1
annotation not available (810 aa)
       
 
  0.997
PP1S1_781V6.1
annotation not available (744 aa)
     
 
  0.996
SYP8
Qa-SNARE, SYP8/Ufe1p/Syntaxin 18-type (316 aa)
     
 
  0.981
PP1S302_56V6.1
annotation not available (1177 aa)
     
   
  0.972
SEC20
Qb-SNARE, Sec20-family (310 aa)
           
  0.919
PP1S145_53V6.1
annotation not available (842 aa)
           
  0.885
PP1S148_83V6.2
annotation not available (1118 aa)
     
        0.861
PP1S506_3V6.1
annotation not available (224 aa)
       
      0.849
SEC22A2-2
R-SNARE, SEC22-family ; Belongs to the synaptobrevin family (219 aa)
       
      0.813
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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