STRINGSTRING
PP1S34_155V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S34_155V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S34_155V6.1Predicted protein (412 aa)    
Predicted Functional Partners:
PP1S447_11V6.1
Predicted protein (223 aa)
     
 
  0.928
PP1S347_24V6.1
Predicted protein (223 aa)
     
 
  0.928
PP1S2_197V6.1
Predicted protein (223 aa)
     
 
  0.928
PP1S22_94V6.1
Predicted protein (223 aa)
     
 
  0.928
PP1S100_221V6.1
Annotation not available (289 aa)
     
 
  0.928
rpl16
Ribosomal protein L16 (561 aa)
     
 
  0.924
PP1S294_14V6.1
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (434 aa)
   
   
0.819
PP1S46_317V6.2
Predicted protein (490 aa)
     
   
  0.714
PP1S106_134V6.1
Predicted protein (329 aa)
     
        0.656
PP1S198_54V6.1
Predicted protein (358 aa)
     
        0.620
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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