STRINGSTRING
PP1S34_213V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S34_213V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S34_213V6.1Predicted protein (693 aa)    
Predicted Functional Partners:
rpl16
Ribosomal protein L16 (561 aa)
     
  0.994
PP1S152_64V6.1
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (113 aa)
   
  0.987
PP1S169_50V6.1
Predicted protein (480 aa)
   
 
  0.986
PP1S144_93V6.1
Predicted protein (304 aa)
     
  0.973
PP1S117_86V6.1
Predicted protein (303 aa)
     
  0.973
PP1S196_122V6.1
Predicted protein (295 aa)
     
  0.972
PP1S16_82V6.1
Annotation not available (308 aa)
     
  0.972
PP1S134_66V6.1
Predicted protein (308 aa)
     
  0.972
PP1S359_26V6.1
Predicted protein (181 aa)
     
  0.969
PP1S24_126V6.1
Predicted protein (183 aa)
     
  0.969
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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