STRINGSTRING
PP1S34_27V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S34_27V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S34_27V6.1Predicted protein (63 aa)    
Predicted Functional Partners:
GTC1501
FACT complex subunit (1060 aa)
     
  0.990
PAFB1501
Paf1 complex protein (631 aa)
     
  0.982
PAFC1501
Paf1 complex protein (1019 aa)
     
  0.982
PAFD1501
Paf1 complex protein (642 aa)
     
  0.982
PAFA1501
Paf1 complex protein (609 aa)
     
  0.981
PP1S63_208V6.1
Predicted protein (333 aa)
     
  0.978
PP1S230_93V6.1
Predicted protein (333 aa)
     
  0.978
PP1S165_119V6.2
Predicted protein (333 aa)
     
  0.978
CK1a1
Predicted protein (434 aa)
     
  0.978
PP1S14_240V6.1
Annotation not available (465 aa)
     
  0.970
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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