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STRINGSTRING
PP1S34_430V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S34_430V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S34_430V6.2Predicted protein (315 aa)    
Predicted Functional Partners:
PP1S155_53V6.1
Predicted protein (568 aa)
       
 
  0.948
PP1S139_38V6.1
Predicted protein (452 aa)
     
 
  0.938
PP1S42_163V6.1
Predicted protein (553 aa)
     
 
  0.933
PP1S31_293V6.2
annotation not available (366 aa)
     
 
  0.933
PP1S238_76V6.3
Predicted protein (333 aa)
     
 
  0.918
PP1S505_21V6.1
Predicted protein (160 aa)
     
        0.885
PP1S68_186V6.1
Predicted protein; Belongs to the SKP1 family (101 aa)
     
        0.882
PP1S424_27V6.1
Predicted protein; Belongs to the SKP1 family (265 aa)
     
        0.882
RabD12
Rab1/RabD-family small GTPase (203 aa)
     
 
  0.821
RabD11
Rab1/RabD-family small GTPase (206 aa)
     
 
  0.821
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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