STRINGSTRING
PP1S3509_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S3509_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S3509_1V6.1Predicted protein (322 aa)    
Predicted Functional Partners:
PP1S43_232V6.1
Imidazole glycerol phosphate synthase subunit hisF (617 aa)
   
 
  0.997
PP1S149_275V6.1
Predicted protein (963 aa)
   
 
  0.971
PP1S272_58V6.1
Predicted protein (302 aa)
   
 
  0.919
PP1S8_124V6.1
Predicted protein (542 aa)
         
  0.915
PP1S55_252V6.1
Annotation not available (384 aa)
         
  0.915
PP1S37_83V6.1
Imidazoleglycerol-phosphate dehydratase (332 aa)
   
   
  0.883
PP1S175_129V6.1
Predicted protein (423 aa)
   
   
  0.879
PP1S3_614V6.1
Predicted protein (419 aa)
   
 
  0.871
PP1S251_13V6.1
Predicted protein (324 aa)
   
 
  0.871
PP1S28_327V6.1
Inosine-5’-monophosphate dehydrogenase (416 aa)
   
   
  0.864
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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