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STRINGSTRING
GTC1501 protein (Physcomitrella patens) - STRING interaction network
"GTC1501" - FACT complex subunit in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GTC1501FACT complex subunit (1060 aa)    
Predicted Functional Partners:
PP1S199_36V6.1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (674 aa)
     
 
  0.998
PP1S34_27V6.1
Predicted protein (63 aa)
     
 
  0.995
CHR1530
SNF2 family DNA-dependent ATPase (817 aa)
     
 
  0.987
CHR1525
annotation not available (905 aa)
     
 
  0.987
CHR1529
Chromatin-remodeling complex ATPase; SNF2 family DNA-dependent ATPase (1049 aa)
     
 
  0.987
CHR1527
Chromatin-remodeling complex ATPase; SNF2 family DNA-dependent ATPase (1047 aa)
     
 
  0.987
PAFC1501
Paf1 complex protein (1019 aa)
     
 
  0.980
PAFB1501
Paf1 complex protein (631 aa)
     
 
  0.979
PAFD1501
Paf1 complex protein (642 aa)
     
 
  0.978
PP1S257_37V6.1
DNA polymerase (1555 aa)
     
 
  0.973
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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