STRINGSTRING
YDG1501 protein (Physcomitrella patens) - STRING interaction network
"YDG1501" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YDG1501Predicted protein (323 aa)    
Predicted Functional Partners:
SWRCA1502
DNA methyltransferase 1-associated protein (485 aa)
     
  0.970
PP1S28_230V6.1
Annotation not available (488 aa)
     
  0.970
PP1S48_69V6.1
Predicted protein (512 aa)
       
  0.964
PP1S1_420V6.1
Predicted protein (541 aa)
       
 
  0.961
ARP1509
Actin-related protein Arp4 (438 aa)
     
  0.960
ARP1508
Actin-related protein ARP4 (435 aa)
     
  0.960
PP1S194_183V6.1
Annotation not available (449 aa)
     
  0.958
EPL1501
Polycomb enhancer protein (497 aa)
     
  0.958
HAM1501
Histone acetyltransferase (462 aa)
     
  0.957
PP1S1_162V6.2
Annotation not available (516 aa)
     
  0.956
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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