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STRINGSTRING
PP1S379_40V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S379_40V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S379_40V6.1Predicted protein (219 aa)    
Predicted Functional Partners:
PP1S124_3V6.2
Predicted protein (420 aa)
           
  0.767
PP1S292_63V6.1
Predicted protein (728 aa)
           
  0.765
RS27
Arginine/serine-rich splicing factor RS27 transcript I (233 aa)
           
  0.752
PP1S20_258V6.1
Predicted protein (783 aa)
           
  0.619
PP1S17_94V6.1
Predicted protein (603 aa)
           
  0.619
PP1S100_76V6.1
Predicted protein (788 aa)
           
  0.619
PP1S9_232V6.1
annotation not available (574 aa)
         
  0.578
PP1S49_137V6.1
Predicted protein (575 aa)
         
  0.578
PP1S260_24V6.1
Predicted protein (576 aa)
         
  0.578
PP1S114_157V6.1
Predicted protein (578 aa)
         
  0.578
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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