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STRINGSTRING
PP1S37_150V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S37_150V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S37_150V6.2Predicted protein (391 aa)    
Predicted Functional Partners:
PP1S19_29V6.1
Predicted protein (296 aa)
   
  0.996
PP1S41_319V6.1
Arginine decarboxylase ; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily (689 aa)
       
  0.972
PP1S14_213V6.1
Arginine decarboxylase ; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily (694 aa)
       
  0.972
PP1S34_341V6.1
Predicted protein (437 aa)
   
   
 
0.806
PP1S96_83V6.1
Predicted protein (440 aa)
 
     
  0.745
PP1S54_259V6.1
Predicted protein (343 aa)
         
  0.742
PP1S41_50V6.2
Predicted protein (355 aa)
         
  0.742
PP1S279_58V6.2
Predicted protein (355 aa)
         
  0.742
PP1S81_46V6.1
Predicted protein (389 aa)
 
     
  0.720
PP1S23_26V6.1
Predicted protein (395 aa)
 
     
  0.720
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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