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STRINGSTRING
PP1S37_98V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S37_98V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S37_98V6.1Predicted protein (226 aa)    
Predicted Functional Partners:
PP1S136_220V6.1
Predicted protein (260 aa)
     
 
  0.996
PP1S28_215V6.1
Uncharacterized protein (475 aa)
     
 
  0.995
PP1S403_39V6.1
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (245 aa)
     
 
  0.993
PP1S222_58V6.1
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (245 aa)
     
 
  0.993
PP1S431_4V6.1
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (232 aa)
     
 
  0.993
PP1S138_84V6.2
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (240 aa)
     
 
  0.993
PP1S91_142V6.1
Predicted protein (599 aa)
     
 
  0.993
PP1S197_80V6.1
Predicted protein; Mitochondrial GTPase 1 (377 aa)
     
 
  0.993
PP1S144_97V6.1
Predicted protein (595 aa)
     
 
  0.993
PP1S43_13V6.1
Predicted protein (169 aa)
     
 
  0.993
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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