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STRINGSTRING
PP1S3842_2V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S3842_2V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S3842_2V6.1Predicted protein (415 aa)    
Predicted Functional Partners:
PP1S17_383V6.1
Predicted protein (450 aa)
     
      0.846
PP1S1309_3V6.1
Predicted protein (368 aa)
 
            0.732
PP1S241_28V6.1
Predicted protein (534 aa)
           
  0.634
PP1S23_11V6.2
Glutathione S-transferase kappa (240 aa)
   
   
  0.620
PP1S90_155V6.1
Predicted protein (336 aa)
           
  0.615
PP1S55_276V6.2
Predicted protein (403 aa)
           
  0.615
PP1S293_87V6.2
Predicted protein (312 aa)
         
  0.575
PP1S114_148V6.2
Predicted protein (306 aa)
   
   
  0.575
PP1S73_93V6.1
Predicted protein (515 aa)
   
   
  0.572
PP1S405_31V6.1
Predicted protein (515 aa)
   
   
  0.572
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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