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STRINGSTRING
PP1S385_14V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S385_14V6.1" - Pectate lyase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S385_14V6.1Pectate lyase (482 aa)    
Predicted Functional Partners:
PP1S76_125V6.1
Predicted protein (561 aa)
 
   
  0.881
PP1S151_23V6.2
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (636 aa)
 
   
  0.839
PP1S14_353V6.1
Predicted protein (445 aa)
 
   
  0.772
PP1S35_51V6.1
Predicted protein (555 aa)
 
   
  0.771
PP1S129_155V6.1
Pectinesterase (322 aa)
 
   
  0.770
PP1S236_87V6.1
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (371 aa)
 
   
  0.769
PP1S45_249V6.1
Pectinesterase (347 aa)
 
   
  0.768
PP1S67_157V6.1
Pectinesterase (358 aa)
 
   
  0.768
PP1S112_177V6.1
Pectinesterase (370 aa)
 
   
  0.768
PP1S341_66V6.1
Pectinesterase (374 aa)
 
   
  0.767
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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