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STRINGSTRING
PP1S38_178V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S38_178V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S38_178V6.1Predicted protein (916 aa)    
Predicted Functional Partners:
PP1S17_11V6.1
annotation not available (447 aa)
           
  0.889
PP1S59_348V6.1
annotation not available (1048 aa)
           
  0.786
PP1S240_31V6.1
Predicted protein (193 aa)
           
  0.749
CHR1530
SNF2 family DNA-dependent ATPase (817 aa)
     
   
  0.713
MBD1501
Uncharacterized protein (300 aa)
           
  0.707
SGS1501
Suppressor of silencing (725 aa)
           
  0.689
PpDME1
Uncharacterized protein (1849 aa)
     
   
  0.638
PP1S226_20V6.2
annotation not available (1814 aa)
     
   
  0.638
DNG1501
annotation not available (1933 aa)
     
   
  0.638
PP1S15_414V6.2
Predicted protein; Ubiquitin carboxyl-terminal hydrolase (1328 aa)
           
  0.607
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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