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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S38_211V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S38_211V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S38_211V6.1Predicted protein (1057 aa)    
Predicted Functional Partners:
PP1S376_31V6.1
Predicted protein (558 aa)
     
 
  0.974
PP1S141_33V6.1
annotation not available (290 aa)
     
 
  0.974
PP1S3_467V6.1
Predicted protein (757 aa)
     
   
  0.964
PP1S11_10V6.1
annotation not available (806 aa)
     
 
0.929
rpoA
DNA-directed RNA polymerase subunit alpha, chloroplastic; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (450 aa)
       
 
  0.907
PP1S6_191V6.1
Predicted protein (514 aa)
     
 
  0.893
PP1S5_92V6.1
annotation not available (1043 aa)
     
        0.885
PP1S200_101V6.1
Predicted protein (387 aa)
     
 
  0.873
PP1S61_255V6.3
Predicted protein (571 aa)
     
        0.859
PP1S22_38V6.1
Predicted protein (561 aa)
     
        0.859
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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