STRINGSTRING
PP1S38_275V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S38_275V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S38_275V6.1Predicted protein (3065 aa)    
Predicted Functional Partners:
PP1S219_74V6.1
Predicted protein (205 aa)
     
  0.814
PP1S152_63V6.1
Intraflagellar transport protein IFT88 (867 aa)
     
 
  0.782
PP1S36_180V6.1
Annotation not available (147 aa)
     
 
  0.773
PP1S465_5V6.1
Annotation not available (1762 aa)
         
  0.756
PP1S91_98V6.1
Annotation not available (856 aa)
     
 
  0.754
PP1S70_224V6.1
Intraflagellar transport protein IFT57 (431 aa)
     
 
  0.753
PP1S56_81V6.1
Annotation not available (820 aa)
     
 
  0.745
PP1S246_13V6.1
Intraflagellar transport protein IFT52 (320 aa)
     
 
  0.745
PP1S42_115V6.1
Predicted protein (3274 aa)
     
  0.741
PP1S9_164V6.2
Annotation not available (1419 aa)
       
  0.740
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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