STRINGSTRING
PP1S38_330V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S38_330V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S38_330V6.1Predicted protein (531 aa)    
Predicted Functional Partners:
aoc
Predicted protein (189 aa)
     
 
  0.949
PP1S1_207V6.1
Predicted protein (188 aa)
     
 
  0.949
PpLOX7
Lipoxygenase (966 aa)
     
 
  0.947
PpLOX12
Lipoxygenase (880 aa)
     
 
  0.939
PpLOX8a
Predicted protein (922 aa)
     
 
  0.906
PpLOX1
Lipoxygenase (938 aa)
     
 
  0.906
PpLOX2
Lipoxygenase (938 aa)
     
 
  0.906
PP1S41_314V6.1
Annotation not available (318 aa)
         
    0.900
PP1S312_49V6.1
Annotation not available (346 aa)
         
    0.900
PP1S312_48V6.1
Annotation not available (390 aa)
         
    0.900
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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