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PP1S38_85V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S38_85V6.1" - Peptide deformylase in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S38_85V6.1Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins (370 aa)    
Predicted Functional Partners:
PP1S1_793V6.3
annotation not available (291 aa)
   
 
  0.944
PP1S152_64V6.1
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (113 aa)
   
 
  0.935
PP1S178_83V6.1
Predicted protein (318 aa)
     
 
  0.929
PP1S19_202V6.1
Predicted protein (188 aa)
   
 
  0.921
PP1S170_45V6.1
Predicted protein (163 aa)
   
 
  0.921
PP1S167_18V6.1
Predicted protein (187 aa)
   
 
  0.921
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
     
 
  0.894
PP1S345_41V6.1
50S ribosomal protein L35 ; Belongs to the bacterial ribosomal protein bL35 family (126 aa)
   
      0.879
PP1S324_20V6.1
50S ribosomal protein L35 ; Belongs to the bacterial ribosomal protein bL35 family (126 aa)
   
      0.879
PP1S337_11V6.1
Predicted protein (258 aa)
   
 
  0.869
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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