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STRINGSTRING
PP1S395_19V6.3 protein (Physcomitrella patens) - STRING interaction network
"PP1S395_19V6.3" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S395_19V6.3Predicted protein (536 aa)    
Predicted Functional Partners:
PP1S39_104V6.1
Predicted protein (744 aa)
       
      0.786
rac2
Predicted protein; Rop-family small GTPase ; Belongs to the small GTPase superfamily. Rho family (196 aa)
       
 
  0.778
Rop3
Rop-family small GTPase ; Belongs to the small GTPase superfamily. Rho family (196 aa)
       
 
  0.778
ROP2
Rac-like GTP binding protein; Rop-family small GTPase ; Belongs to the small GTPase superfamily. Rho family (196 aa)
       
 
  0.778
Rop4
Predicted protein; Rop-family small GTPase (196 aa)
       
 
  0.778
PP1S7_322V6.1
annotation not available (1216 aa)
     
      0.755
RS27
Arginine/serine-rich splicing factor RS27 transcript I (233 aa)
     
 
  0.624
PP1S124_3V6.2
Predicted protein (420 aa)
           
  0.601
PP1S641_1V6.1
Predicted protein (807 aa)
       
      0.597
PP1S292_63V6.1
Predicted protein (728 aa)
           
  0.597
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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