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STRINGSTRING
PP1S395_30V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S395_30V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S395_30V6.1Predicted protein (57 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
 
  0.999
PP1S83_182V6.1
Ribosomal protein ; Belongs to the bacterial ribosomal protein bL36 family (130 aa)
   
 
  0.996
PP1S47_241V6.1
Predicted protein (108 aa)
   
 
  0.994
PP1S152_64V6.1
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (113 aa)
   
 
  0.993
PP1S1_793V6.3
annotation not available (291 aa)
     
 
  0.993
PP1S337_11V6.1
Predicted protein (258 aa)
   
 
  0.993
PP1S199_88V6.1
annotation not available (219 aa)
   
 
  0.993
PP1S128_49V6.1
Predicted protein; Belongs to the universal ribosomal protein uS9 family (225 aa)
   
 
  0.993
PP1S77_21V6.1
Predicted protein (129 aa)
   
 
  0.992
PP1S76_155V6.3
Predicted protein (160 aa)
   
 
  0.992
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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