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STRINGSTRING
PP1S398_25V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S398_25V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S398_25V6.1annotation not available (257 aa)    
Predicted Functional Partners:
PP1S355_21V6.1
Predicted protein (752 aa)
     
 
  0.939
PP1S2_36V6.1
annotation not available (563 aa)
     
 
  0.939
ARP1509
Actin-related protein Arp4 ; Belongs to the actin family (438 aa)
     
 
  0.932
ARP1508
Actin-related protein ARP4 ; Belongs to the actin family (435 aa)
     
 
  0.932
CHC1501
SWI/SNF transcription activation complex subunit (487 aa)
     
 
  0.916
CHC1502
SWI/SNF transcription activation complex subunit (473 aa)
     
 
  0.916
PP1S173_113V6.1
annotation not available (96 aa)
     
 
  0.916
CHC1503
SWI/SNF transcription activation complex subunit (476 aa)
     
 
  0.916
PP1S1178_3V6.1
annotation not available (93 aa)
     
 
  0.916
PP1S9_14V6.1
annotation not available (53 aa)
     
 
  0.914
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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