STRINGSTRING
PP1S39_261V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S39_261V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S39_261V6.1Predicted protein (303 aa)    
Predicted Functional Partners:
PP1S1_162V6.2
Annotation not available (516 aa)
       
  0.978
HAM1503
Histone acetyltransferase (202 aa)
       
  0.978
HAM1501
Histone acetyltransferase (462 aa)
       
  0.978
HDA1504
Histone deacetylase (723 aa)
     
  0.968
HDA1505
Predicted protein (774 aa)
     
  0.968
HDA1506
Histone deacetylase (431 aa)
     
  0.968
SWRCA1502
DNA methyltransferase 1-associated protein (485 aa)
     
  0.964
PP1S28_230V6.1
Annotation not available (488 aa)
     
  0.964
PP1S55_45V6.1
Predicted protein (704 aa)
     
 
  0.962
PP1S267_76V6.1
Predicted protein (792 aa)
     
 
  0.962
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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