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STRINGSTRING
PP1S39_296V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S39_296V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S39_296V6.2Predicted protein (117 aa)    
Predicted Functional Partners:
PP1S157_4V6.1
Predicted protein (260 aa)
           
  0.611
PP1S59_321V6.1
Uncharacterized protein (133 aa)
     
   
  0.553
PP1S338_47V6.1
Predicted protein (131 aa)
     
   
  0.553
PP1S322_39V6.1
annotation not available (157 aa)
     
   
  0.528
PP1S215_88V6.1
Predicted protein; Cytochrome b-c1 complex subunit 7 (125 aa)
     
   
  0.528
PP1S14_64V6.1
Predicted protein; Cytochrome b-c1 complex subunit 7 (124 aa)
     
   
  0.528
PP1S391_32V6.1
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (289 aa)
     
   
  0.520
PP1S80_58V6.1
annotation not available (264 aa)
           
  0.469
PP1S61_228V6.1
Predicted protein (321 aa)
           
  0.469
PP1S61_215V6.1
Predicted protein (321 aa)
           
  0.469
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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