• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S3_213V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S3_213V6.1" - Protein YIPF in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S3_213V6.1Protein YIPF (244 aa)    
Predicted Functional Partners:
PP1S249_8V6.1
Protein YIPF (234 aa)
     
 
  0.889
PP1S249_6V6.1
Protein YIPF (287 aa)
     
 
  0.889
PP1S219_47V6.1
annotation not available (259 aa)
     
 
  0.889
PP1S210_84V6.1
Predicted protein (282 aa)
     
 
  0.856
PP1S135_101V6.1
Predicted protein (274 aa)
     
 
  0.856
RabD12
Rab1/RabD-family small GTPase (203 aa)
     
 
  0.746
RabD11
Rab1/RabD-family small GTPase (206 aa)
     
 
  0.746
PP1S201_3V6.1
annotation not available (244 aa)
     
 
  0.746
PP1S77_160V6.1
annotation not available (77 aa)
     
 
  0.693
PP1S390_24V6.1
Predicted protein (77 aa)
     
 
  0.693
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (13%) [HD]